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		<id>https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=50147</id>
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		<summary type="html">&lt;p&gt;104.11.210.161: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;(note wiki contains some useful clues re previous neuro research at Noisebridge ... For example, the [[Analog_EEG_Amp]] page describes some project ideas and work done by others here in 2012) &lt;br /&gt;
&lt;br /&gt;
https://metacademy.org/&lt;br /&gt;
-- machine learning knowledge graph&lt;br /&gt;
&lt;br /&gt;
http://www.thetalkingmachines.com/ -- podcast&lt;br /&gt;
&lt;br /&gt;
== Code ==&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/gotrain (our ANN code)&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/openbci-golang-server (EEG data acquisition and visualization software for OpenBCI)&lt;br /&gt;
&lt;br /&gt;
== Hidden Markov Models ==&lt;br /&gt;
&lt;br /&gt;
http://www.cs.sjsu.edu/~stamp/RUA/HMM.pdf&lt;br /&gt;
-- &amp;quot;A Revealing Introduction to Hidden Markov Models&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.jelmerborst.nl/pubs/Borst2013b.pdf&lt;br /&gt;
-- &amp;quot;Discovering Processing Stages by combining EEG with Hidden Markov Models&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2230664/pdf/nihms-34528.pdf&lt;br /&gt;
-- &amp;quot;A Stochastic Framework for Evaluating Seizure Prediction Algorithms Using Hidden Markov Models&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.schalklab.org/sites/default/files/misc/Coupled%20hidden%20markov%20model%20for%20electrocorticographic%20signal%20classification.pdf&lt;br /&gt;
-- &amp;quot;Coupled Hidden Markov Model for Electrocorticographic Signal Classification&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Long Short Term Memory ==&lt;br /&gt;
&lt;br /&gt;
http://deeplearning.cs.cmu.edu/pdfs/Hochreiter97_lstm.pdf&lt;br /&gt;
-- &amp;quot;Long Short-Term Memory&amp;quot;&lt;br /&gt;
&lt;br /&gt;
ftp://ftp.idsia.ch/pub/juergen/2002_icannMusic.pdf&lt;br /&gt;
-- &amp;quot;Learning The Long-Term Structure of the Blues&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.overcomplete.net/papers/nn2012.pdf&lt;br /&gt;
-- &amp;quot;A generalized LSTM-like training algorithm for second-order recurrent neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.iro.umontreal.ca/~eckdoug/papers/2003_nn.pdf&lt;br /&gt;
-- &amp;quot;Kalman filters improve LSTM network performance in problems unsolvable by traditional recurrent nets&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://googleresearch.blogspot.ch/2015/09/google-voice-search-faster-and-more.html&lt;br /&gt;
-- &amp;quot;Long Short-Term Memory dramatically improves Google Voice etc&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Question Answering ==&lt;br /&gt;
&lt;br /&gt;
http://www.overcomplete.net/papers/bica2012.pdf&lt;br /&gt;
-- &amp;quot;Neural Architectures for Learning to Answer Questions&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://cs.umd.edu/~miyyer/pubs/2014_qb_rnn.pdf&lt;br /&gt;
-- &amp;quot;A Neural Network for Factoid Question Answering over Paragraphs&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1502.05698.pdf&lt;br /&gt;
-- &amp;quot;Towards AI-Complete Question Answering: A Set of Prerequisite Toy Tasks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.peterschueller.com/pub/2014/2014_winograd_schemas_relevance_knowledge_graphs.pdf&lt;br /&gt;
-- &amp;quot;Tackling Winograd Schemas by Formalizing Relevance Theory in Knowledge Graphs&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://ijcai.org/papers15/Papers/IJCAI15-190.pdf&lt;br /&gt;
-- &amp;quot;Towards Addressing the Winograd Schema Challenge — Building and Using a Semantic Parser and a Knowledge Hunting Module&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1506.05869v2.pdf&lt;br /&gt;
-- &amp;quot;A Neural Conversational Model&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1508.05508v1.pdf&lt;br /&gt;
-- &amp;quot;Towards Neural Network-based Reasoning&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.visualqa.org/vqa_iccv2015.pdf&lt;br /&gt;
-- &amp;quot;VQA: Visual Question Answering&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Propagators ==&lt;br /&gt;
Cells must support three operations:&lt;br /&gt;
*add some content&lt;br /&gt;
*collect the content currently accumulated&lt;br /&gt;
*register a propagator to be notified when the accumulated content changes&lt;br /&gt;
*When new content is added to a cell, the cell must merge the addition with the content already present. When a propagator asks for the content of a cell, the cell must deliver a complete summary of the information that has been added to it.&lt;br /&gt;
*The merging of content must be commutative, associative, and idempotent. The behavior of propagators must be monotonic with respect to the lattice induced by the merge operation.&lt;br /&gt;
*http://web.mit.edu/~axch/www/art.pdf *http://groups.csail.mit.edu/mac/users/gjs/propagators/&lt;br /&gt;
*http://dustycloud.org/blog/sussman-on-ai/&lt;br /&gt;
&lt;br /&gt;
== Boosting ==&lt;br /&gt;
&lt;br /&gt;
http://www.cs.princeton.edu/courses/archive/spr08/cos424/readings/Schapire2003.pdf&lt;br /&gt;
-- &amp;quot;The Boosting Approach to Machine Learning An Overview&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.19.9955&amp;amp;rep=rep1&amp;amp;type=pdf&lt;br /&gt;
-- &amp;quot;Ensembling Neural Networks: Many Could Be Better Than All&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cs.columbia.edu/~rocco/Public/mlj9.pdf&lt;br /&gt;
-- &amp;quot;Random Classification Noise Defeats All Convex Potential Boosters&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Support Vector Machines ==&lt;br /&gt;
&lt;br /&gt;
http://research.microsoft.com/en-us/um/people/cburges/papers/svmtutorial.pdf&lt;br /&gt;
-- &amp;quot;A Tutorial on Support Vector Machines for Pattern Recognition&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Wire Length / Small World Networks ==&lt;br /&gt;
&lt;br /&gt;
http://koulakovlab.cshl.edu/publications/koulakov_chklovskii_2000.pdf&lt;br /&gt;
-- &amp;quot;A wire length minimization approach to ocular dominance patterns in mammalian visual cortex&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://papers.nips.cc/paper/1910-foundations-for-a-circuit-complexity-theory-of-sensory-processing.pdf&lt;br /&gt;
-- &amp;quot;Foundations for a Circuit Complexity Theory of Sensory Processing&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://www.nada.kth.se/~cjo/documents/small_world.pdf&lt;br /&gt;
-- &amp;quot;Small-World Connectivity and Attractor Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.doc.ic.ac.uk/~mpsha/ShanahanPhysRevEPreprint.pdf&lt;br /&gt;
-- &amp;quot;The Dynamical Complexity of Small-World Networks of Spiking Neurons&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.dam.brown.edu/people/elie/papers/small_world.pdf&lt;br /&gt;
-- &amp;quot;Autoassociative Memory Retrieval and Spontaneous Activity Bumps in Small-World Networks of Integrate-and-Fire Neurons&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.332.4501&amp;amp;rep=rep1&amp;amp;type=pdf&lt;br /&gt;
-- &amp;quot;Transition from Random to Small-World Neural Networks by STDP Learning Rule&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://tamar.tau.ac.il/~eshel/papers/J_Neural_Engineering.pdf&lt;br /&gt;
-- &amp;quot;Compact self-wiring in cultured neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Backpropagation ==&lt;br /&gt;
&lt;br /&gt;
http://www4.rgu.ac.uk/files/chapter3%20-%20bp.pdf (works through simple example)&lt;br /&gt;
&lt;br /&gt;
http://mattmazur.com/2015/03/17/a-step-by-step-backpropagation-example/&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K7.pdf&lt;br /&gt;
&lt;br /&gt;
also see http://page.mi.fu-berlin.de/rojas/neural/neuron.pdf (entire book &amp;quot;Neural Networks - a Systemic Introduction&amp;quot; by Raul Rojas)&lt;br /&gt;
&lt;br /&gt;
http://work.caltech.edu/lectures.html Hoeffding&#039;s inequality, VC Dimension and Back Propagation ANN&lt;br /&gt;
&lt;br /&gt;
http://www.cs.stir.ac.uk/research/publications/techreps/pdf/TR148.pdf (&amp;quot;Learning XOR: exploring the space of a classic problem&amp;quot;)&lt;br /&gt;
&lt;br /&gt;
http://www.sysc.pdx.edu/classes/Werbos-Backpropagation%20through%20time.pdf&lt;br /&gt;
-- &amp;quot;Backpropagation Through Time: What it Does and How to Do It&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Convolutional Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://white.stanford.edu/teach/index.php/An_Introduction_to_Convolutional_Neural_Networks&lt;br /&gt;
&lt;br /&gt;
http://www.cv-foundation.org/openaccess/content_cvpr_2015/papers/Dosovitskiy_Learning_to_Generate_2015_CVPR_paper.pdf -- &amp;quot;Learning to Generate Chairs With Convolutional Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.pamitc.org/cvpr15/files/lecun-20150610-cvpr-keynote.pdf&lt;br /&gt;
-- &amp;quot;What&#039;s Wrong With Deep Learning?&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Computer Vision ==&lt;br /&gt;
&lt;br /&gt;
http://www.cv-foundation.org/openaccess/CVPR2015.py -- some interesting papers here&lt;br /&gt;
&lt;br /&gt;
http://www.cv-foundation.org/openaccess/content_cvpr_2015/papers/Nguyen_Deep_Neural_Networks_2015_CVPR_paper.pdf -- &amp;quot;Deep Neural Networks are Easily Fooled: High Confidence Predictions for Unrecognizable Images&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Spiking Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://ncs.ethz.ch/projects/evospike/publications/ICONIP2011%20Springer%20LNCS%20Nutta.pdf -- &amp;quot;EEG Classification with BSA Spike Encoding Algorithm and Evolving Probabilistic Spiking Neural Network&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://dai.fmph.uniba.sk/~benus/confers/CNGM_ICANN05.pdf -- &amp;quot;Computational Neurogenetic Modeling: Integration of Spiking Neural Networks, Gene Networks, and Signal Processing Techniques&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.3902 -- &amp;quot;Pattern Recognition in a Bucket&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.igi.tugraz.at/maass/psfiles/221.pdf -- &amp;quot;Noise as a Resource for Computation and Learning in Spiking Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://web.stanford.edu/group/brainsinsilicon/goals.html -- Neurogrid&lt;br /&gt;
&lt;br /&gt;
http://apt.cs.manchester.ac.uk/projects/SpiNNaker/ -- SpiNNaker&lt;br /&gt;
&lt;br /&gt;
http://personalpages.manchester.ac.uk/staff/javier.navaridas/pubs/2012.jpdc.pdf -- more on SpiNNaker&lt;br /&gt;
&lt;br /&gt;
==Hierarchical Temporal Memory==&lt;br /&gt;
&lt;br /&gt;
https://github.com/numenta/nupic/wiki/Hierarchical-Temporal-Memory-Theory&lt;br /&gt;
&lt;br /&gt;
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000532 -- &amp;quot;Towards a Mathematical Theory of Cortical Micro-circuits&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Distributed Neural Networks==&lt;br /&gt;
&lt;br /&gt;
https://www.paypal-engineering.com/2015/01/12/deep-learning-on-hadoop-2-0-2/ -- paypal engineering blog, paper describes implementation of neural network as described by [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006] on Hadoop&lt;br /&gt;
&lt;br /&gt;
http://www.sciencemag.org/content/suppl/2006/08/04/313.5786.504.DC1/Hinton.SOM.pdf -- supplementary material for [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006]&lt;br /&gt;
&lt;br /&gt;
http://www.cs.otago.ac.nz/staffpriv/hzy/papers/pdcs03.pdf -- &amp;quot;Parallelization of a Backpropagation Neural Network on a Cluster Computer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1404.5997v2.pdf -- &amp;quot;One weird trick for parallelizing convolutional neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.ics.uci.edu/~jmoorkan/pub/gpusnn-ijcnn.pdf -- &amp;quot;Efficient Simulation of Large-Scale Spiking Neural Networks Using CUDA Graphics Processors&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Hopfield nets and RBMs==&lt;br /&gt;
&lt;br /&gt;
https://class.coursera.org/neuralnets-2012-001/lecture -- Lecture 11 - 15 to aid in understanding of Hinton 2006 paper above&lt;br /&gt;
&lt;br /&gt;
http://www.pnas.org/content/79/8/2554.full.pdf -- &amp;quot;Neural networks and physical systems with emergent collective computational abilities&amp;quot; (Hopfield 1982)&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K13.pdf -- &amp;quot;The Hopfield Model&amp;quot; (Rojas 1996)&lt;br /&gt;
&lt;br /&gt;
http://www.seas.upenn.edu/~wulsin/docs/wulsin2010.pdf -- &amp;quot;Semi-Supervised Anomaly Detection for EEG Waveforms Using Deep Belief Nets&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cse.buffalo.edu/DBGROUP/bioinformatics/papers/cameraready_xwjiabibe.pdf -- &amp;quot;A Novel Semi-supervised Deep Learning Framework&lt;br /&gt;
for Affective State Recognition on EEG Signals&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cs.toronto.edu/~hinton/absps/guideTR.pdf -- &amp;quot;A Practical Guide to Training Restricted Boltzmann Machines&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1503.07793v2.pdf&lt;br /&gt;
-- &amp;quot;Gibbs Sampling with Low-Power Spiking Digital Neurons&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Entrainment==&lt;br /&gt;
&lt;br /&gt;
http://www.scirp.org/Journal/PaperDownload.aspx?paperID=33251 -- &amp;quot;Alpha Rhythms Response to 10 Hz Flicker Is Wavelength Dependent&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.brainmachine.co.uk/wp-content/uploads/Herrmann_Flicker.pdf -- &amp;quot;EEG responses to 1–100 Hz flicker: resonance phenomena in visual cortex and their potential correlation to cognitive phenomena&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.jneurosci.org/content/23/37/11621.full.pdf -- &amp;quot;Human Cerebral Activation during Steady-State Visual-Evoked Responses&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.dauwels.com/Papers/CogDyn%202009.pdf -- &amp;quot;On the synchrony of steady state visual evoked potentials and oscillatory burst events&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://www.tu-ilmenau.de/fileadmin/public/lorentz-force/publications/peer/2012/haueisen2012/Halbleib_JCN_2012_Topographic_analysis_photic_driving.pdf -- &amp;quot;Topographic Analysis of Engagement and Disengagement of Neural Oscillators in Photic Driving: A Combined Electroencephalogram/Magnetoencephalogram Study&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==(not necessarilly very) Current Discussion==&lt;br /&gt;
&lt;br /&gt;
re Tononi&#039;s &amp;quot;Integrated Information Theory&amp;quot; http://www.scottaaronson.com/blog/?p=1799&lt;br /&gt;
&lt;br /&gt;
(19 February 2014) starting to think about possibility for experiments (loosely) related to [https://en.wikipedia.org/wiki/Visual_evoked_potential Visual Evoked Potential] research again - for instance:&lt;br /&gt;
&lt;br /&gt;
http://www.biosemi.com/publications/pdf/Bierman.pdf -- Wave function collapse&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:CoherentEEGAmbiguousFigureBinding.pdf]] -- &amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; -- Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&lt;br /&gt;
Note these two papers flog coherence measures - not trying to focus so much on that analysis right now, more interested in general understanding of what these experiments are about with possible goal of designing simpler experiments &amp;amp; analysis of similar perceptual/cognitive phenomena.&lt;br /&gt;
&lt;br /&gt;
Here is an article that looks more directly at visual evoked potential measures:&lt;br /&gt;
&lt;br /&gt;
[[File:ERP_Stereoscopic.pdf]] -- &amp;quot;Evoked Responses to Distinct and Nebulous Stereoscopic Stimuli&amp;quot; -- Dunlop et al 1983&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(11 September 2013) more on analysis methods:&lt;br /&gt;
&lt;br /&gt;
http://slesinsky.org/brian/misc/eulers_identity.html&lt;br /&gt;
&lt;br /&gt;
http://www.dspguide.com/ch8/1.htm&lt;br /&gt;
&lt;br /&gt;
[[File:Fftw3.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ParametricEEGAnalysis.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICATutorial.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICAFrequencyDomainEEG.pdf]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(21 August 2013) - readings relating statistical (etc math / signal processing / pattern recognition / machine learning) methods for EEG data interpretation.  A lot of stuff, a bit of nonsense ... and ... statistics!&lt;br /&gt;
&lt;br /&gt;
Would be good to identify any papers suitable for more in-depth study.  Currently have a wide field to graze for selections:&lt;br /&gt;
&lt;br /&gt;
[[File:DWTandFFTforEEG.pdf]] &amp;quot;EEG Classifier using Fourier Transform and Wavelet Transform&amp;quot; -- Maan Shaker, 2007&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:KulaichevCoherence.pdf]] -- &amp;quot;The Informativeness of Coherence Analysis in EEG Studies&amp;quot; -- A. P. Kulaichev 2009 &#039;&#039;note: interesting critical perspective re limitations, discussion of alternative analytics&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
[[File:ContinuousAndDiscreteWaveletTransforms.pdf]] -- review of (pre-1990) wavelet literature -- Christopher Heil and David Walnut, 1989&lt;br /&gt;
&lt;br /&gt;
[[File:EEGGammaMeditation.pdf]] -- &amp;quot;Brain sources of EEG gamma frequency during volitionally meditation-induced, altered states of consciousness, and experience of the self&amp;quot; -- Dietrich Lehman et al 2001&lt;br /&gt;
&lt;br /&gt;
http://neuro.hut.fi/~pavan/home/Hyvarinen2010_FourierICA_Neuroimage.pdf - &amp;quot;Independent component analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis&amp;quot; -- Aapo Hyvarinen, Pavan Ramkumar, Lauri Parkkonen, Riitta Hari - paper published in Neuroimage vol 49 (2010)&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.nickgillian.com/software/grt OpenSource Machine Learning Algs from NG @MIT]&lt;br /&gt;
&amp;lt;br&amp;gt;[https://www.usenix.org/system/files/conference/usenixsecurity12/sec12-final56.pdf Consumer grade EEG used to see &amp;quot;P300&amp;quot; reponse] and for thoes with a short attention span [http://www.extremetech.com/extreme/134682-hackers-backdoor-the-human-brain-successfully-extract-sensitive-data tldr]&lt;br /&gt;
&amp;lt;br&amp;gt;(discussed at meetup Wednesday 31 July 2013)&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&amp;lt;br&amp;gt;[[File:CoherentEEGAmbiguousFigureBinding.pdf]]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;We tested the hypothesis that perception of an alternative image in ambiguous figures would be manifest as high-frequency (gamma) components that become synchronized over multiple scalp sites as a &amp;quot;cognitive binding&amp;quot; process occurs.&amp;quot;&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://dreamsessions.net art, dream, and eeg]&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.believermag.com/issues/200710/?read=article_aviv mind v brain, hobson v solms]&lt;br /&gt;
&amp;lt;br&amp;gt;http://en.wikipedia.org/wiki/Activation-synthesis_hypothesis&lt;br /&gt;
&amp;lt;br&amp;gt;[[File:HobsomREMDreamProtoconsciousness.pdf|Hobson09ProtosconsciousnessREMDream]]&lt;br /&gt;
&lt;br /&gt;
&amp;quot;Hobson and McCarley originally proposed in the 1970s that the differences in the waking-NREM-REM sleep cycle was the result of interactions between aminergic REM-off cells and cholinergic REM-on cells.[4] This was perceived as the activation-synthesis model, stating that brain activation during REM sleep results in synthesis of dream creation.[1][1] Hobson&#039;s five cardinal characteristics include: intense emotions, illogical content, apparent sensory impressions, uncritical acceptance of dream events, and difficulty in being remembered.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
Berkeley Labs&lt;br /&gt;
&lt;br /&gt;
[http://gallantlab.org/index.html Gallant Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://walkerlab.berkeley.edu/ Walker Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://socrates.berkeley.edu/~plab/ Palmer Group]&lt;br /&gt;
&lt;br /&gt;
==Sleep Research==&lt;br /&gt;
&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335403/ Comment on the AASM Manual for the Scoring of Sleep and Associated Events]&lt;br /&gt;
&lt;br /&gt;
==random tangents==&lt;br /&gt;
(following previous discussion) - we might select a few to study in more depth&lt;br /&gt;
(... or not!  Plenty more to explore - suggestions (random or otherwise) are welcome.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;stereoscopic perception:&#039;&#039;&#039;&lt;br /&gt;
*[[File:ERP_Stereoscopic.pdf]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
some (maybe) interesting background on Information Theory (cool title...)&lt;br /&gt;
 Claude Shannon: &amp;quot;Communication in the Presence of Noise&amp;quot;&lt;br /&gt;
 [[File:Shannon_noise.pdf]]&lt;br /&gt;
 &amp;quot;We will call a system that transmits without errors at the rate &#039;&#039;C&#039;&#039; an ideal system.&lt;br /&gt;
  Such a system cannot be achieved with any finite encoding process&lt;br /&gt;
  but can be approximated as closely as desired.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
wikipedia etc quick reads:&lt;br /&gt;
 https://en.wikipedia.org/wiki/Eeg&lt;br /&gt;
 https://en.wikipedia.org/wiki/Neural_synchronization&lt;br /&gt;
 https://en.wikipedia.org/wiki/Event-related_potentials&lt;br /&gt;
 http://www.scholarpedia.org/article/Spike-and-wave_oscillations&lt;br /&gt;
 http://www.scholarpedia.org/article/Thalamocortical_oscillations&lt;br /&gt;
&lt;br /&gt;
==Previously==&lt;br /&gt;
&lt;br /&gt;
[http://www.psychiclab.net/ Masahiro&#039;s EEG Device/IBVA Software]&lt;br /&gt;
&lt;br /&gt;
[http://www.instructables.com/id/open-brain-wave-interface-hardware-1/ and ... open source hardware design and kits on instructables.com]&lt;br /&gt;
&lt;br /&gt;
[http://brainstorms.puzzlebox.info/ Puzzlebox - Opensource BCI Developers]&lt;br /&gt;
&lt;br /&gt;
Morgan from GazzLab @ MissionBay/UCSF&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
https://github.com/gazzlab&lt;br /&gt;
&lt;br /&gt;
Let&#039;s ease into a lightweight &amp;quot;journal club&amp;quot; discussion with this technical report from NeuroSky.&lt;br /&gt;
&lt;br /&gt;
Name: A user-friendly SSVEP-based brain-computer interface using a time-domain classifier, Luo A and Sullivan TJ 2010&lt;br /&gt;
&lt;br /&gt;
URL: [[File:NeuroSkyVEP.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
Please add your comments &amp;amp; questions here.&lt;br /&gt;
&lt;br /&gt;
==Background Reading==&lt;br /&gt;
&lt;br /&gt;
http://nanosouffle.net/ (view into Arxiv.org)&lt;br /&gt;
&lt;br /&gt;
Name: Hunting for Meaning after Midnight, Miller 2007&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0002.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Name: Broken mirrors, Ram, VS, &amp;amp; Oberman, LM, 2006, Nov&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0003.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Ramachandran Critique&lt;br /&gt;
&lt;br /&gt;
http://blogs.scientificamerican.com/guest-blog/2012/11/06/whats-so-special-about-mirror-neurons/&lt;br /&gt;
&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773693/&lt;br /&gt;
&lt;br /&gt;
Sleep/Dream Studies&lt;br /&gt;
&lt;br /&gt;
http://www.cns.atr.jp/dni/en/publications/&lt;br /&gt;
&lt;br /&gt;
==NeuroSky Docs==&lt;br /&gt;
[[File:NeuroSkyDongleProtocol.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
[[File:NeuroSkyCommunicationsProtocol.pdf‎]]&lt;/div&gt;</summary>
		<author><name>104.11.210.161</name></author>
	</entry>
	<entry>
		<id>https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=50143</id>
		<title>DreamTeam/Reading</title>
		<link rel="alternate" type="text/html" href="https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=50143"/>
		<updated>2015-11-15T01:31:13Z</updated>

		<summary type="html">&lt;p&gt;104.11.210.161: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;(note wiki contains some useful clues re previous neuro research at Noisebridge ... For example, the [[Analog_EEG_Amp]] page describes some project ideas and work done by others here in 2012) &lt;br /&gt;
&lt;br /&gt;
http://www.thetalkingmachines.com/&lt;br /&gt;
&lt;br /&gt;
https://metacademy.org/&lt;br /&gt;
-- machine learning knowledge graph&lt;br /&gt;
&lt;br /&gt;
== Code ==&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/gotrain (our ANN code)&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/openbci-golang-server (EEG data acquisition and visualization software for OpenBCI)&lt;br /&gt;
&lt;br /&gt;
== Long Short Term Memory ==&lt;br /&gt;
&lt;br /&gt;
http://deeplearning.cs.cmu.edu/pdfs/Hochreiter97_lstm.pdf&lt;br /&gt;
-- &amp;quot;Long Short-Term Memory&amp;quot;&lt;br /&gt;
&lt;br /&gt;
ftp://ftp.idsia.ch/pub/juergen/2002_icannMusic.pdf&lt;br /&gt;
-- &amp;quot;Learning The Long-Term Structure of the Blues&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.overcomplete.net/papers/nn2012.pdf&lt;br /&gt;
-- &amp;quot;A generalized LSTM-like training algorithm for second-order recurrent neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.iro.umontreal.ca/~eckdoug/papers/2003_nn.pdf&lt;br /&gt;
-- &amp;quot;Kalman filters improve LSTM network performance in problems unsolvable by traditional recurrent nets&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Question Answering ==&lt;br /&gt;
&lt;br /&gt;
http://www.overcomplete.net/papers/bica2012.pdf&lt;br /&gt;
-- &amp;quot;Neural Architectures for Learning to Answer Questions&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://cs.umd.edu/~miyyer/pubs/2014_qb_rnn.pdf&lt;br /&gt;
-- &amp;quot;A Neural Network for Factoid Question Answering over Paragraphs&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1502.05698.pdf&lt;br /&gt;
-- &amp;quot;Towards AI-Complete Question Answering: A Set of Prerequisite Toy Tasks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.peterschueller.com/pub/2014/2014_winograd_schemas_relevance_knowledge_graphs.pdf&lt;br /&gt;
-- &amp;quot;Tackling Winograd Schemas by Formalizing Relevance Theory in Knowledge Graphs&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://ijcai.org/papers15/Papers/IJCAI15-190.pdf&lt;br /&gt;
-- &amp;quot;Towards Addressing the Winograd Schema Challenge — Building and Using a Semantic Parser and a Knowledge Hunting Module&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1506.05869v2.pdf&lt;br /&gt;
-- &amp;quot;A Neural Conversational Model&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1508.05508v1.pdf&lt;br /&gt;
-- &amp;quot;Towards Neural Network-based Reasoning&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.visualqa.org/vqa_iccv2015.pdf&lt;br /&gt;
-- &amp;quot;VQA: Visual Question Answering&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Propagators ==&lt;br /&gt;
Cells must support three operations:&lt;br /&gt;
*add some content&lt;br /&gt;
*collect the content currently accumulated&lt;br /&gt;
*register a propagator to be notified when the accumulated content changes&lt;br /&gt;
*When new content is added to a cell, the cell must merge the addition with the content already present. When a propagator asks for the content of a cell, the cell must deliver a complete summary of the information that has been added to it.&lt;br /&gt;
*The merging of content must be commutative, associative, and idempotent. The behavior of propagators must be monotonic with respect to the lattice induced by the merge operation.&lt;br /&gt;
*http://web.mit.edu/~axch/www/art.pdf *http://groups.csail.mit.edu/mac/users/gjs/propagators/&lt;br /&gt;
*http://dustycloud.org/blog/sussman-on-ai/&lt;br /&gt;
&lt;br /&gt;
== Boosting ==&lt;br /&gt;
&lt;br /&gt;
http://www.cs.princeton.edu/courses/archive/spr08/cos424/readings/Schapire2003.pdf&lt;br /&gt;
-- &amp;quot;The Boosting Approach to Machine Learning An Overview&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.19.9955&amp;amp;rep=rep1&amp;amp;type=pdf&lt;br /&gt;
-- &amp;quot;Ensembling Neural Networks: Many Could Be Better Than All&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cs.columbia.edu/~rocco/Public/mlj9.pdf&lt;br /&gt;
-- &amp;quot;Random Classification Noise Defeats All Convex Potential Boosters&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Support Vector Machines ==&lt;br /&gt;
&lt;br /&gt;
http://research.microsoft.com/en-us/um/people/cburges/papers/svmtutorial.pdf&lt;br /&gt;
-- &amp;quot;A Tutorial on Support Vector Machines for Pattern Recognition&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Wire Length / Small World Networks ==&lt;br /&gt;
&lt;br /&gt;
http://koulakovlab.cshl.edu/publications/koulakov_chklovskii_2000.pdf&lt;br /&gt;
-- &amp;quot;A wire length minimization approach to ocular dominance patterns in mammalian visual cortex&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://papers.nips.cc/paper/1910-foundations-for-a-circuit-complexity-theory-of-sensory-processing.pdf&lt;br /&gt;
-- &amp;quot;Foundations for a Circuit Complexity Theory of Sensory Processing&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://www.nada.kth.se/~cjo/documents/small_world.pdf&lt;br /&gt;
-- &amp;quot;Small-World Connectivity and Attractor Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.doc.ic.ac.uk/~mpsha/ShanahanPhysRevEPreprint.pdf&lt;br /&gt;
-- &amp;quot;The Dynamical Complexity of Small-World Networks of Spiking Neurons&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.dam.brown.edu/people/elie/papers/small_world.pdf&lt;br /&gt;
-- &amp;quot;Autoassociative Memory Retrieval and Spontaneous Activity Bumps in Small-World Networks of Integrate-and-Fire Neurons&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.332.4501&amp;amp;rep=rep1&amp;amp;type=pdf&lt;br /&gt;
-- &amp;quot;Transition from Random to Small-World Neural Networks by STDP Learning Rule&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://tamar.tau.ac.il/~eshel/papers/J_Neural_Engineering.pdf&lt;br /&gt;
-- &amp;quot;Compact self-wiring in cultured neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Backpropagation ==&lt;br /&gt;
&lt;br /&gt;
http://www4.rgu.ac.uk/files/chapter3%20-%20bp.pdf (works through simple example)&lt;br /&gt;
&lt;br /&gt;
http://mattmazur.com/2015/03/17/a-step-by-step-backpropagation-example/&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K7.pdf&lt;br /&gt;
&lt;br /&gt;
also see http://page.mi.fu-berlin.de/rojas/neural/neuron.pdf (entire book &amp;quot;Neural Networks - a Systemic Introduction&amp;quot; by Raul Rojas)&lt;br /&gt;
&lt;br /&gt;
http://work.caltech.edu/lectures.html Hoeffding&#039;s inequality, VC Dimension and Back Propagation ANN&lt;br /&gt;
&lt;br /&gt;
http://www.cs.stir.ac.uk/research/publications/techreps/pdf/TR148.pdf (&amp;quot;Learning XOR: exploring the space of a classic problem&amp;quot;)&lt;br /&gt;
&lt;br /&gt;
http://www.sysc.pdx.edu/classes/Werbos-Backpropagation%20through%20time.pdf&lt;br /&gt;
-- &amp;quot;Backpropagation Through Time: What it Does and How to Do It&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Convolutional Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://white.stanford.edu/teach/index.php/An_Introduction_to_Convolutional_Neural_Networks&lt;br /&gt;
&lt;br /&gt;
http://www.cv-foundation.org/openaccess/content_cvpr_2015/papers/Dosovitskiy_Learning_to_Generate_2015_CVPR_paper.pdf -- &amp;quot;Learning to Generate Chairs With Convolutional Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.pamitc.org/cvpr15/files/lecun-20150610-cvpr-keynote.pdf&lt;br /&gt;
-- &amp;quot;What&#039;s Wrong With Deep Learning?&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Computer Vision ==&lt;br /&gt;
&lt;br /&gt;
http://www.cv-foundation.org/openaccess/CVPR2015.py -- some interesting papers here&lt;br /&gt;
&lt;br /&gt;
http://www.cv-foundation.org/openaccess/content_cvpr_2015/papers/Nguyen_Deep_Neural_Networks_2015_CVPR_paper.pdf -- &amp;quot;Deep Neural Networks are Easily Fooled: High Confidence Predictions for Unrecognizable Images&amp;quot;&lt;br /&gt;
&lt;br /&gt;
== Spiking Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://ncs.ethz.ch/projects/evospike/publications/ICONIP2011%20Springer%20LNCS%20Nutta.pdf -- &amp;quot;EEG Classification with BSA Spike Encoding Algorithm and Evolving Probabilistic Spiking Neural Network&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://dai.fmph.uniba.sk/~benus/confers/CNGM_ICANN05.pdf -- &amp;quot;Computational Neurogenetic Modeling: Integration of Spiking Neural Networks, Gene Networks, and Signal Processing Techniques&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.3902 -- &amp;quot;Pattern Recognition in a Bucket&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.igi.tugraz.at/maass/psfiles/221.pdf -- &amp;quot;Noise as a Resource for Computation and Learning in Spiking Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://web.stanford.edu/group/brainsinsilicon/goals.html -- Neurogrid&lt;br /&gt;
&lt;br /&gt;
http://apt.cs.manchester.ac.uk/projects/SpiNNaker/ -- SpiNNaker&lt;br /&gt;
&lt;br /&gt;
http://personalpages.manchester.ac.uk/staff/javier.navaridas/pubs/2012.jpdc.pdf -- more on SpiNNaker&lt;br /&gt;
&lt;br /&gt;
==Hierarchical Temporal Memory==&lt;br /&gt;
&lt;br /&gt;
https://github.com/numenta/nupic/wiki/Hierarchical-Temporal-Memory-Theory&lt;br /&gt;
&lt;br /&gt;
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000532 -- &amp;quot;Towards a Mathematical Theory of Cortical Micro-circuits&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Distributed Neural Networks==&lt;br /&gt;
&lt;br /&gt;
https://www.paypal-engineering.com/2015/01/12/deep-learning-on-hadoop-2-0-2/ -- paypal engineering blog, paper describes implementation of neural network as described by [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006] on Hadoop&lt;br /&gt;
&lt;br /&gt;
http://www.sciencemag.org/content/suppl/2006/08/04/313.5786.504.DC1/Hinton.SOM.pdf -- supplementary material for [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006]&lt;br /&gt;
&lt;br /&gt;
http://www.cs.otago.ac.nz/staffpriv/hzy/papers/pdcs03.pdf -- &amp;quot;Parallelization of a Backpropagation Neural Network on a Cluster Computer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1404.5997v2.pdf -- &amp;quot;One weird trick for parallelizing convolutional neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.ics.uci.edu/~jmoorkan/pub/gpusnn-ijcnn.pdf -- &amp;quot;Efficient Simulation of Large-Scale Spiking Neural Networks Using CUDA Graphics Processors&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Hopfield nets and RBMs==&lt;br /&gt;
&lt;br /&gt;
https://class.coursera.org/neuralnets-2012-001/lecture -- Lecture 11 - 15 to aid in understanding of Hinton 2006 paper above&lt;br /&gt;
&lt;br /&gt;
http://www.pnas.org/content/79/8/2554.full.pdf -- &amp;quot;Neural networks and physical systems with emergent collective computational abilities&amp;quot; (Hopfield 1982)&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K13.pdf -- &amp;quot;The Hopfield Model&amp;quot; (Rojas 1996)&lt;br /&gt;
&lt;br /&gt;
http://www.seas.upenn.edu/~wulsin/docs/wulsin2010.pdf -- &amp;quot;Semi-Supervised Anomaly Detection for EEG Waveforms Using Deep Belief Nets&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cse.buffalo.edu/DBGROUP/bioinformatics/papers/cameraready_xwjiabibe.pdf -- &amp;quot;A Novel Semi-supervised Deep Learning Framework&lt;br /&gt;
for Affective State Recognition on EEG Signals&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cs.toronto.edu/~hinton/absps/guideTR.pdf -- &amp;quot;A Practical Guide to Training Restricted Boltzmann Machines&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Entrainment==&lt;br /&gt;
&lt;br /&gt;
http://www.scirp.org/Journal/PaperDownload.aspx?paperID=33251 -- &amp;quot;Alpha Rhythms Response to 10 Hz Flicker Is Wavelength Dependent&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.brainmachine.co.uk/wp-content/uploads/Herrmann_Flicker.pdf -- &amp;quot;EEG responses to 1–100 Hz flicker: resonance phenomena in visual cortex and their potential correlation to cognitive phenomena&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.jneurosci.org/content/23/37/11621.full.pdf -- &amp;quot;Human Cerebral Activation during Steady-State Visual-Evoked Responses&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.dauwels.com/Papers/CogDyn%202009.pdf -- &amp;quot;On the synchrony of steady state visual evoked potentials and oscillatory burst events&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://www.tu-ilmenau.de/fileadmin/public/lorentz-force/publications/peer/2012/haueisen2012/Halbleib_JCN_2012_Topographic_analysis_photic_driving.pdf -- &amp;quot;Topographic Analysis of Engagement and Disengagement of Neural Oscillators in Photic Driving: A Combined Electroencephalogram/Magnetoencephalogram Study&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==(not necessarilly very) Current Discussion==&lt;br /&gt;
&lt;br /&gt;
re Tononi&#039;s &amp;quot;Integrated Information Theory&amp;quot; http://www.scottaaronson.com/blog/?p=1799&lt;br /&gt;
&lt;br /&gt;
(19 February 2014) starting to think about possibility for experiments (loosely) related to [https://en.wikipedia.org/wiki/Visual_evoked_potential Visual Evoked Potential] research again - for instance:&lt;br /&gt;
&lt;br /&gt;
http://www.biosemi.com/publications/pdf/Bierman.pdf -- Wave function collapse&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:CoherentEEGAmbiguousFigureBinding.pdf]] -- &amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; -- Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&lt;br /&gt;
Note these two papers flog coherence measures - not trying to focus so much on that analysis right now, more interested in general understanding of what these experiments are about with possible goal of designing simpler experiments &amp;amp; analysis of similar perceptual/cognitive phenomena.&lt;br /&gt;
&lt;br /&gt;
Here is an article that looks more directly at visual evoked potential measures:&lt;br /&gt;
&lt;br /&gt;
[[File:ERP_Stereoscopic.pdf]] -- &amp;quot;Evoked Responses to Distinct and Nebulous Stereoscopic Stimuli&amp;quot; -- Dunlop et al 1983&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(11 September 2013) more on analysis methods:&lt;br /&gt;
&lt;br /&gt;
http://slesinsky.org/brian/misc/eulers_identity.html&lt;br /&gt;
&lt;br /&gt;
http://www.dspguide.com/ch8/1.htm&lt;br /&gt;
&lt;br /&gt;
[[File:Fftw3.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ParametricEEGAnalysis.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICATutorial.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICAFrequencyDomainEEG.pdf]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(21 August 2013) - readings relating statistical (etc math / signal processing / pattern recognition / machine learning) methods for EEG data interpretation.  A lot of stuff, a bit of nonsense ... and ... statistics!&lt;br /&gt;
&lt;br /&gt;
Would be good to identify any papers suitable for more in-depth study.  Currently have a wide field to graze for selections:&lt;br /&gt;
&lt;br /&gt;
[[File:DWTandFFTforEEG.pdf]] &amp;quot;EEG Classifier using Fourier Transform and Wavelet Transform&amp;quot; -- Maan Shaker, 2007&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:KulaichevCoherence.pdf]] -- &amp;quot;The Informativeness of Coherence Analysis in EEG Studies&amp;quot; -- A. P. Kulaichev 2009 &#039;&#039;note: interesting critical perspective re limitations, discussion of alternative analytics&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
[[File:ContinuousAndDiscreteWaveletTransforms.pdf]] -- review of (pre-1990) wavelet literature -- Christopher Heil and David Walnut, 1989&lt;br /&gt;
&lt;br /&gt;
[[File:EEGGammaMeditation.pdf]] -- &amp;quot;Brain sources of EEG gamma frequency during volitionally meditation-induced, altered states of consciousness, and experience of the self&amp;quot; -- Dietrich Lehman et al 2001&lt;br /&gt;
&lt;br /&gt;
http://neuro.hut.fi/~pavan/home/Hyvarinen2010_FourierICA_Neuroimage.pdf - &amp;quot;Independent component analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis&amp;quot; -- Aapo Hyvarinen, Pavan Ramkumar, Lauri Parkkonen, Riitta Hari - paper published in Neuroimage vol 49 (2010)&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.nickgillian.com/software/grt OpenSource Machine Learning Algs from NG @MIT]&lt;br /&gt;
&amp;lt;br&amp;gt;[https://www.usenix.org/system/files/conference/usenixsecurity12/sec12-final56.pdf Consumer grade EEG used to see &amp;quot;P300&amp;quot; reponse] and for thoes with a short attention span [http://www.extremetech.com/extreme/134682-hackers-backdoor-the-human-brain-successfully-extract-sensitive-data tldr]&lt;br /&gt;
&amp;lt;br&amp;gt;(discussed at meetup Wednesday 31 July 2013)&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&amp;lt;br&amp;gt;[[File:CoherentEEGAmbiguousFigureBinding.pdf]]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;We tested the hypothesis that perception of an alternative image in ambiguous figures would be manifest as high-frequency (gamma) components that become synchronized over multiple scalp sites as a &amp;quot;cognitive binding&amp;quot; process occurs.&amp;quot;&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://dreamsessions.net art, dream, and eeg]&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.believermag.com/issues/200710/?read=article_aviv mind v brain, hobson v solms]&lt;br /&gt;
&amp;lt;br&amp;gt;http://en.wikipedia.org/wiki/Activation-synthesis_hypothesis&lt;br /&gt;
&amp;lt;br&amp;gt;[[File:HobsomREMDreamProtoconsciousness.pdf|Hobson09ProtosconsciousnessREMDream]]&lt;br /&gt;
&lt;br /&gt;
&amp;quot;Hobson and McCarley originally proposed in the 1970s that the differences in the waking-NREM-REM sleep cycle was the result of interactions between aminergic REM-off cells and cholinergic REM-on cells.[4] This was perceived as the activation-synthesis model, stating that brain activation during REM sleep results in synthesis of dream creation.[1][1] Hobson&#039;s five cardinal characteristics include: intense emotions, illogical content, apparent sensory impressions, uncritical acceptance of dream events, and difficulty in being remembered.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
Berkeley Labs&lt;br /&gt;
&lt;br /&gt;
[http://gallantlab.org/index.html Gallant Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://walkerlab.berkeley.edu/ Walker Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://socrates.berkeley.edu/~plab/ Palmer Group]&lt;br /&gt;
&lt;br /&gt;
==Sleep Research==&lt;br /&gt;
&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335403/ Comment on the AASM Manual for the Scoring of Sleep and Associated Events]&lt;br /&gt;
&lt;br /&gt;
==random tangents==&lt;br /&gt;
(following previous discussion) - we might select a few to study in more depth&lt;br /&gt;
(... or not!  Plenty more to explore - suggestions (random or otherwise) are welcome.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;stereoscopic perception:&#039;&#039;&#039;&lt;br /&gt;
*[[File:ERP_Stereoscopic.pdf]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
some (maybe) interesting background on Information Theory (cool title...)&lt;br /&gt;
 Claude Shannon: &amp;quot;Communication in the Presence of Noise&amp;quot;&lt;br /&gt;
 [[File:Shannon_noise.pdf]]&lt;br /&gt;
 &amp;quot;We will call a system that transmits without errors at the rate &#039;&#039;C&#039;&#039; an ideal system.&lt;br /&gt;
  Such a system cannot be achieved with any finite encoding process&lt;br /&gt;
  but can be approximated as closely as desired.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
wikipedia etc quick reads:&lt;br /&gt;
 https://en.wikipedia.org/wiki/Eeg&lt;br /&gt;
 https://en.wikipedia.org/wiki/Neural_synchronization&lt;br /&gt;
 https://en.wikipedia.org/wiki/Event-related_potentials&lt;br /&gt;
 http://www.scholarpedia.org/article/Spike-and-wave_oscillations&lt;br /&gt;
 http://www.scholarpedia.org/article/Thalamocortical_oscillations&lt;br /&gt;
&lt;br /&gt;
==Previously==&lt;br /&gt;
&lt;br /&gt;
[http://www.psychiclab.net/ Masahiro&#039;s EEG Device/IBVA Software]&lt;br /&gt;
&lt;br /&gt;
[http://www.instructables.com/id/open-brain-wave-interface-hardware-1/ and ... open source hardware design and kits on instructables.com]&lt;br /&gt;
&lt;br /&gt;
[http://brainstorms.puzzlebox.info/ Puzzlebox - Opensource BCI Developers]&lt;br /&gt;
&lt;br /&gt;
Morgan from GazzLab @ MissionBay/UCSF&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
https://github.com/gazzlab&lt;br /&gt;
&lt;br /&gt;
Let&#039;s ease into a lightweight &amp;quot;journal club&amp;quot; discussion with this technical report from NeuroSky.&lt;br /&gt;
&lt;br /&gt;
Name: A user-friendly SSVEP-based brain-computer interface using a time-domain classifier, Luo A and Sullivan TJ 2010&lt;br /&gt;
&lt;br /&gt;
URL: [[File:NeuroSkyVEP.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
Please add your comments &amp;amp; questions here.&lt;br /&gt;
&lt;br /&gt;
==Background Reading==&lt;br /&gt;
&lt;br /&gt;
http://nanosouffle.net/ (view into Arxiv.org)&lt;br /&gt;
&lt;br /&gt;
Name: Hunting for Meaning after Midnight, Miller 2007&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0002.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Name: Broken mirrors, Ram, VS, &amp;amp; Oberman, LM, 2006, Nov&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0003.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Ramachandran Critique&lt;br /&gt;
&lt;br /&gt;
http://blogs.scientificamerican.com/guest-blog/2012/11/06/whats-so-special-about-mirror-neurons/&lt;br /&gt;
&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773693/&lt;br /&gt;
&lt;br /&gt;
Sleep/Dream Studies&lt;br /&gt;
&lt;br /&gt;
http://www.cns.atr.jp/dni/en/publications/&lt;br /&gt;
&lt;br /&gt;
==NeuroSky Docs==&lt;br /&gt;
[[File:NeuroSkyDongleProtocol.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
[[File:NeuroSkyCommunicationsProtocol.pdf‎]]&lt;/div&gt;</summary>
		<author><name>104.11.210.161</name></author>
	</entry>
	<entry>
		<id>https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=49728</id>
		<title>DreamTeam/Reading</title>
		<link rel="alternate" type="text/html" href="https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=49728"/>
		<updated>2015-10-19T16:04:03Z</updated>

		<summary type="html">&lt;p&gt;104.11.210.161: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;(note wiki contains some useful clues re previous neuro research at Noisebridge ... For example, the [[Analog_EEG_Amp]] page describes some project ideas and work done by others here in 2012) &lt;br /&gt;
&lt;br /&gt;
== Propagators ==&lt;br /&gt;
Cells must support three operations:&lt;br /&gt;
*add some content&lt;br /&gt;
*collect the content currently accumulated&lt;br /&gt;
*register a propagator to be notified when the accumulated content changes&lt;br /&gt;
*When new content is added to a cell, the cell must merge the addition with the content already present. When a propagator asks for the content of a cell, the cell must deliver a complete summary of the information that has been added to it.&lt;br /&gt;
*The merging of content must be commutative, associative, and idempotent. The behavior of propagators must be monotonic with respect to the lattice induced by the merge operation.&lt;br /&gt;
*http://web.mit.edu/~axch/www/art.pdf *http://groups.csail.mit.edu/mac/users/gjs/propagators/&lt;br /&gt;
*http://dustycloud.org/blog/sussman-on-ai/&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Code ==&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/gotrain (our ANN code)&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/openbci-golang-server (EEG data acquisition and visualization software for OpenBCI)&lt;br /&gt;
&lt;br /&gt;
== Backpropagation ==&lt;br /&gt;
&lt;br /&gt;
http://www4.rgu.ac.uk/files/chapter3%20-%20bp.pdf (works through simple example)&lt;br /&gt;
&lt;br /&gt;
http://mattmazur.com/2015/03/17/a-step-by-step-backpropagation-example/&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K7.pdf&lt;br /&gt;
&lt;br /&gt;
also see http://page.mi.fu-berlin.de/rojas/neural/neuron.pdf (entire book &amp;quot;Neural Networks - a Systemic Introduction&amp;quot; by Raul Rojas)&lt;br /&gt;
&lt;br /&gt;
http://work.caltech.edu/lectures.html Hoeffding&#039;s inequality, VC Dimension and Back Propagation ANN&lt;br /&gt;
&lt;br /&gt;
http://www.cs.stir.ac.uk/research/publications/techreps/pdf/TR148.pdf (&amp;quot;Learning XOR: exploring the space of a classic problem&amp;quot;)&lt;br /&gt;
&lt;br /&gt;
== Convolutional Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://white.stanford.edu/teach/index.php/An_Introduction_to_Convolutional_Neural_Networks&lt;br /&gt;
&lt;br /&gt;
== Spiking Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://ncs.ethz.ch/projects/evospike/publications/ICONIP2011%20Springer%20LNCS%20Nutta.pdf -- &amp;quot;EEG Classification with BSA Spike Encoding Algorithm and Evolving Probabilistic Spiking Neural Network&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://dai.fmph.uniba.sk/~benus/confers/CNGM_ICANN05.pdf -- &amp;quot;Computational Neurogenetic Modeling: Integration of Spiking Neural Networks, Gene Networks, and Signal Processing Techniques&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.3902 -- &amp;quot;Pattern Recognition in a Bucket&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.igi.tugraz.at/maass/psfiles/221.pdf -- &amp;quot;Noise as a Resource for Computation and Learning in Spiking Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://web.stanford.edu/group/brainsinsilicon/goals.html -- Neurogrid&lt;br /&gt;
&lt;br /&gt;
http://apt.cs.manchester.ac.uk/projects/SpiNNaker/ -- SpiNNaker&lt;br /&gt;
&lt;br /&gt;
http://personalpages.manchester.ac.uk/staff/javier.navaridas/pubs/2012.jpdc.pdf -- more on SpiNNaker&lt;br /&gt;
&lt;br /&gt;
==Hierarchical Temporal Memory==&lt;br /&gt;
&lt;br /&gt;
https://github.com/numenta/nupic/wiki/Hierarchical-Temporal-Memory-Theory&lt;br /&gt;
&lt;br /&gt;
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000532 -- &amp;quot;Towards a Mathematical Theory of Cortical Micro-circuits&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Distributed Neural Networks==&lt;br /&gt;
&lt;br /&gt;
https://www.paypal-engineering.com/2015/01/12/deep-learning-on-hadoop-2-0-2/ -- paypal engineering blog, paper describes implementation of neural network as described by [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006] on Hadoop&lt;br /&gt;
&lt;br /&gt;
http://www.sciencemag.org/content/suppl/2006/08/04/313.5786.504.DC1/Hinton.SOM.pdf -- supplementary material for [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006]&lt;br /&gt;
&lt;br /&gt;
http://www.cs.otago.ac.nz/staffpriv/hzy/papers/pdcs03.pdf -- &amp;quot;Parallelization of a Backpropagation Neural Network on a Cluster Computer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1404.5997v2.pdf -- &amp;quot;One weird trick for parallelizing convolutional neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.ics.uci.edu/~jmoorkan/pub/gpusnn-ijcnn.pdf -- &amp;quot;Efficient Simulation of Large-Scale Spiking Neural Networks Using CUDA Graphics Processors&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Hopfield nets and RBMs==&lt;br /&gt;
&lt;br /&gt;
https://class.coursera.org/neuralnets-2012-001/lecture -- Lecture 11 - 15 to aid in understanding of Hinton 2006 paper above&lt;br /&gt;
&lt;br /&gt;
http://www.pnas.org/content/79/8/2554.full.pdf -- &amp;quot;Neural networks and physical systems with emergent collective computational abilities&amp;quot; (Hopfield 1982)&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K13.pdf -- &amp;quot;The Hopfield Model&amp;quot; (Rojas 1996)&lt;br /&gt;
&lt;br /&gt;
http://www.seas.upenn.edu/~wulsin/docs/wulsin2010.pdf -- &amp;quot;Semi-Supervised Anomaly Detection for EEG Waveforms Using Deep Belief Nets&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cse.buffalo.edu/DBGROUP/bioinformatics/papers/cameraready_xwjiabibe.pdf -- &amp;quot;A Novel Semi-supervised Deep Learning Framework&lt;br /&gt;
for Affective State Recognition on EEG Signals&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.cs.toronto.edu/~hinton/absps/guideTR.pdf -- &amp;quot;A Practical Guide to Training Restricted Boltzmann Machines&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Entrainment==&lt;br /&gt;
&lt;br /&gt;
http://www.scirp.org/Journal/PaperDownload.aspx?paperID=33251 -- &amp;quot;Alpha Rhythms Response to 10 Hz Flicker Is Wavelength Dependent&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.brainmachine.co.uk/wp-content/uploads/Herrmann_Flicker.pdf -- &amp;quot;EEG responses to 1–100 Hz flicker: resonance phenomena in visual cortex and their potential correlation to cognitive phenomena&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.jneurosci.org/content/23/37/11621.full.pdf -- &amp;quot;Human Cerebral Activation during Steady-State Visual-Evoked Responses&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.dauwels.com/Papers/CogDyn%202009.pdf -- &amp;quot;On the synchrony of steady state visual evoked potentials and oscillatory burst events&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://www.tu-ilmenau.de/fileadmin/public/lorentz-force/publications/peer/2012/haueisen2012/Halbleib_JCN_2012_Topographic_analysis_photic_driving.pdf -- &amp;quot;Topographic Analysis of Engagement and Disengagement of Neural Oscillators in Photic Driving: A Combined Electroencephalogram/Magnetoencephalogram Study&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==(not necessarilly very) Current Discussion==&lt;br /&gt;
&lt;br /&gt;
re Tononi&#039;s &amp;quot;Integrated Information Theory&amp;quot; http://www.scottaaronson.com/blog/?p=1799&lt;br /&gt;
&lt;br /&gt;
(19 February 2014) starting to think about possibility for experiments (loosely) related to [https://en.wikipedia.org/wiki/Visual_evoked_potential Visual Evoked Potential] research again - for instance:&lt;br /&gt;
&lt;br /&gt;
http://www.biosemi.com/publications/pdf/Bierman.pdf -- Wave function collapse&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:CoherentEEGAmbiguousFigureBinding.pdf]] -- &amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; -- Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&lt;br /&gt;
Note these two papers flog coherence measures - not trying to focus so much on that analysis right now, more interested in general understanding of what these experiments are about with possible goal of designing simpler experiments &amp;amp; analysis of similar perceptual/cognitive phenomena.&lt;br /&gt;
&lt;br /&gt;
Here is an article that looks more directly at visual evoked potential measures:&lt;br /&gt;
&lt;br /&gt;
[[File:ERP_Stereoscopic.pdf]] -- &amp;quot;Evoked Responses to Distinct and Nebulous Stereoscopic Stimuli&amp;quot; -- Dunlop et al 1983&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(11 September 2013) more on analysis methods:&lt;br /&gt;
&lt;br /&gt;
http://slesinsky.org/brian/misc/eulers_identity.html&lt;br /&gt;
&lt;br /&gt;
http://www.dspguide.com/ch8/1.htm&lt;br /&gt;
&lt;br /&gt;
[[File:Fftw3.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ParametricEEGAnalysis.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICATutorial.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICAFrequencyDomainEEG.pdf]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(21 August 2013) - readings relating statistical (etc math / signal processing / pattern recognition / machine learning) methods for EEG data interpretation.  A lot of stuff, a bit of nonsense ... and ... statistics!&lt;br /&gt;
&lt;br /&gt;
Would be good to identify any papers suitable for more in-depth study.  Currently have a wide field to graze for selections:&lt;br /&gt;
&lt;br /&gt;
[[File:DWTandFFTforEEG.pdf]] &amp;quot;EEG Classifier using Fourier Transform and Wavelet Transform&amp;quot; -- Maan Shaker, 2007&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:KulaichevCoherence.pdf]] -- &amp;quot;The Informativeness of Coherence Analysis in EEG Studies&amp;quot; -- A. P. Kulaichev 2009 &#039;&#039;note: interesting critical perspective re limitations, discussion of alternative analytics&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
[[File:ContinuousAndDiscreteWaveletTransforms.pdf]] -- review of (pre-1990) wavelet literature -- Christopher Heil and David Walnut, 1989&lt;br /&gt;
&lt;br /&gt;
[[File:EEGGammaMeditation.pdf]] -- &amp;quot;Brain sources of EEG gamma frequency during volitionally meditation-induced, altered states of consciousness, and experience of the self&amp;quot; -- Dietrich Lehman et al 2001&lt;br /&gt;
&lt;br /&gt;
http://neuro.hut.fi/~pavan/home/Hyvarinen2010_FourierICA_Neuroimage.pdf - &amp;quot;Independent component analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis&amp;quot; -- Aapo Hyvarinen, Pavan Ramkumar, Lauri Parkkonen, Riitta Hari - paper published in Neuroimage vol 49 (2010)&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.nickgillian.com/software/grt OpenSource Machine Learning Algs from NG @MIT]&lt;br /&gt;
&amp;lt;br&amp;gt;[https://www.usenix.org/system/files/conference/usenixsecurity12/sec12-final56.pdf Consumer grade EEG used to see &amp;quot;P300&amp;quot; reponse] and for thoes with a short attention span [http://www.extremetech.com/extreme/134682-hackers-backdoor-the-human-brain-successfully-extract-sensitive-data tldr]&lt;br /&gt;
&amp;lt;br&amp;gt;(discussed at meetup Wednesday 31 July 2013)&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&amp;lt;br&amp;gt;[[File:CoherentEEGAmbiguousFigureBinding.pdf]]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;We tested the hypothesis that perception of an alternative image in ambiguous figures would be manifest as high-frequency (gamma) components that become synchronized over multiple scalp sites as a &amp;quot;cognitive binding&amp;quot; process occurs.&amp;quot;&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://dreamsessions.net art, dream, and eeg]&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.believermag.com/issues/200710/?read=article_aviv mind v brain, hobson v solms]&lt;br /&gt;
&amp;lt;br&amp;gt;http://en.wikipedia.org/wiki/Activation-synthesis_hypothesis&lt;br /&gt;
&amp;lt;br&amp;gt;[[File:HobsomREMDreamProtoconsciousness.pdf|Hobson09ProtosconsciousnessREMDream]]&lt;br /&gt;
&lt;br /&gt;
&amp;quot;Hobson and McCarley originally proposed in the 1970s that the differences in the waking-NREM-REM sleep cycle was the result of interactions between aminergic REM-off cells and cholinergic REM-on cells.[4] This was perceived as the activation-synthesis model, stating that brain activation during REM sleep results in synthesis of dream creation.[1][1] Hobson&#039;s five cardinal characteristics include: intense emotions, illogical content, apparent sensory impressions, uncritical acceptance of dream events, and difficulty in being remembered.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
Berkeley Labs&lt;br /&gt;
&lt;br /&gt;
[http://gallantlab.org/index.html Gallant Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://walkerlab.berkeley.edu/ Walker Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://socrates.berkeley.edu/~plab/ Palmer Group]&lt;br /&gt;
&lt;br /&gt;
==Sleep Research==&lt;br /&gt;
&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335403/ Comment on the AASM Manual for the Scoring of Sleep and Associated Events]&lt;br /&gt;
&lt;br /&gt;
==random tangents==&lt;br /&gt;
(following previous discussion) - we might select a few to study in more depth&lt;br /&gt;
(... or not!  Plenty more to explore - suggestions (random or otherwise) are welcome.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;stereoscopic perception:&#039;&#039;&#039;&lt;br /&gt;
*[[File:ERP_Stereoscopic.pdf]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
some (maybe) interesting background on Information Theory (cool title...)&lt;br /&gt;
 Claude Shannon: &amp;quot;Communication in the Presence of Noise&amp;quot;&lt;br /&gt;
 [[File:Shannon_noise.pdf]]&lt;br /&gt;
 &amp;quot;We will call a system that transmits without errors at the rate &#039;&#039;C&#039;&#039; an ideal system.&lt;br /&gt;
  Such a system cannot be achieved with any finite encoding process&lt;br /&gt;
  but can be approximated as closely as desired.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
wikipedia etc quick reads:&lt;br /&gt;
 https://en.wikipedia.org/wiki/Eeg&lt;br /&gt;
 https://en.wikipedia.org/wiki/Neural_synchronization&lt;br /&gt;
 https://en.wikipedia.org/wiki/Event-related_potentials&lt;br /&gt;
 http://www.scholarpedia.org/article/Spike-and-wave_oscillations&lt;br /&gt;
 http://www.scholarpedia.org/article/Thalamocortical_oscillations&lt;br /&gt;
&lt;br /&gt;
==Previously==&lt;br /&gt;
&lt;br /&gt;
[http://www.psychiclab.net/ Masahiro&#039;s EEG Device/IBVA Software]&lt;br /&gt;
&lt;br /&gt;
[http://www.instructables.com/id/open-brain-wave-interface-hardware-1/ and ... open source hardware design and kits on instructables.com]&lt;br /&gt;
&lt;br /&gt;
[http://brainstorms.puzzlebox.info/ Puzzlebox - Opensource BCI Developers]&lt;br /&gt;
&lt;br /&gt;
Morgan from GazzLab @ MissionBay/UCSF&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
https://github.com/gazzlab&lt;br /&gt;
&lt;br /&gt;
Let&#039;s ease into a lightweight &amp;quot;journal club&amp;quot; discussion with this technical report from NeuroSky.&lt;br /&gt;
&lt;br /&gt;
Name: A user-friendly SSVEP-based brain-computer interface using a time-domain classifier, Luo A and Sullivan TJ 2010&lt;br /&gt;
&lt;br /&gt;
URL: [[File:NeuroSkyVEP.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
Please add your comments &amp;amp; questions here.&lt;br /&gt;
&lt;br /&gt;
==Background Reading==&lt;br /&gt;
&lt;br /&gt;
http://nanosouffle.net/ (view into Arxiv.org)&lt;br /&gt;
&lt;br /&gt;
Name: Hunting for Meaning after Midnight, Miller 2007&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0002.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Name: Broken mirrors, Ram, VS, &amp;amp; Oberman, LM, 2006, Nov&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0003.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Ramachandran Critique&lt;br /&gt;
&lt;br /&gt;
http://blogs.scientificamerican.com/guest-blog/2012/11/06/whats-so-special-about-mirror-neurons/&lt;br /&gt;
&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773693/&lt;br /&gt;
&lt;br /&gt;
Sleep/Dream Studies&lt;br /&gt;
&lt;br /&gt;
http://www.cns.atr.jp/dni/en/publications/&lt;br /&gt;
&lt;br /&gt;
==NeuroSky Docs==&lt;br /&gt;
[[File:NeuroSkyDongleProtocol.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
[[File:NeuroSkyCommunicationsProtocol.pdf‎]]&lt;/div&gt;</summary>
		<author><name>104.11.210.161</name></author>
	</entry>
	<entry>
		<id>https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=49629</id>
		<title>DreamTeam/Reading</title>
		<link rel="alternate" type="text/html" href="https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=49629"/>
		<updated>2015-10-10T20:55:13Z</updated>

		<summary type="html">&lt;p&gt;104.11.210.161: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;(note wiki contains some useful clues re previous neuro research at Noisebridge ... For example, the [[Analog_EEG_Amp]] page describes some project ideas and work done by others here in 2012) &lt;br /&gt;
&lt;br /&gt;
== Code ==&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/gotrain (our ANN code)&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/openbci-golang-server (EEG data acquisition and visualization software for OpenBCI)&lt;br /&gt;
&lt;br /&gt;
== Backpropagation ==&lt;br /&gt;
&lt;br /&gt;
http://www4.rgu.ac.uk/files/chapter3%20-%20bp.pdf (works through simple example)&lt;br /&gt;
&lt;br /&gt;
http://mattmazur.com/2015/03/17/a-step-by-step-backpropagation-example/&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K7.pdf&lt;br /&gt;
&lt;br /&gt;
also see http://page.mi.fu-berlin.de/rojas/neural/neuron.pdf (entire book &amp;quot;Neural Networks - a Systemic Introduction&amp;quot; by Raul Rojas)&lt;br /&gt;
&lt;br /&gt;
http://work.caltech.edu/lectures.html Hoeffding&#039;s inequality, VC Dimension and Back Propagation ANN&lt;br /&gt;
&lt;br /&gt;
http://www.cs.stir.ac.uk/research/publications/techreps/pdf/TR148.pdf (&amp;quot;Learning XOR: exploring the space of a classic problem&amp;quot;)&lt;br /&gt;
&lt;br /&gt;
== Spiking Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://ncs.ethz.ch/projects/evospike/publications/ICONIP2011%20Springer%20LNCS%20Nutta.pdf -- &amp;quot;EEG Classification with BSA Spike Encoding Algorithm and Evolving Probabilistic Spiking Neural Network&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://dai.fmph.uniba.sk/~benus/confers/CNGM_ICANN05.pdf -- &amp;quot;Computational Neurogenetic Modeling: Integration of Spiking Neural Networks, Gene Networks, and Signal Processing Techniques&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.3902 -- &amp;quot;Pattern Recognition in a Bucket&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.igi.tugraz.at/maass/psfiles/221.pdf -- &amp;quot;Noise as a Resource for Computation and Learning in Spiking Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://web.stanford.edu/group/brainsinsilicon/goals.html -- Neurogrid&lt;br /&gt;
&lt;br /&gt;
http://apt.cs.manchester.ac.uk/projects/SpiNNaker/ -- SpiNNaker&lt;br /&gt;
&lt;br /&gt;
http://personalpages.manchester.ac.uk/staff/javier.navaridas/pubs/2012.jpdc.pdf -- more on SpiNNaker&lt;br /&gt;
&lt;br /&gt;
==Hierarchical Temporal Memory==&lt;br /&gt;
&lt;br /&gt;
https://github.com/numenta/nupic/wiki/Hierarchical-Temporal-Memory-Theory&lt;br /&gt;
&lt;br /&gt;
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000532 -- &amp;quot;Towards a Mathematical Theory of Cortical Micro-circuits&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Distributed Neural Networks==&lt;br /&gt;
&lt;br /&gt;
https://www.paypal-engineering.com/2015/01/12/deep-learning-on-hadoop-2-0-2/ -- paypal engineering blog, paper describes implementation of neural network as described by [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006] on Hadoop&lt;br /&gt;
&lt;br /&gt;
http://www.sciencemag.org/content/suppl/2006/08/04/313.5786.504.DC1/Hinton.SOM.pdf -- supplementary material for [http://www.maths.bris.ac.uk/~maxvd/reduce_dim.pdf Hinton 2006]&lt;br /&gt;
&lt;br /&gt;
http://www.cs.otago.ac.nz/staffpriv/hzy/papers/pdcs03.pdf -- &amp;quot;Parallelization of a Backpropagation Neural Network on a Cluster Computer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://arxiv.org/pdf/1404.5997v2.pdf -- &amp;quot;One weird trick for parallelizing convolutional neural networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.ics.uci.edu/~jmoorkan/pub/gpusnn-ijcnn.pdf -- &amp;quot;Efficient Simulation of Large-Scale Spiking Neural Networks Using CUDA Graphics Processors&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==Hopfield nets and RBMs==&lt;br /&gt;
&lt;br /&gt;
https://class.coursera.org/neuralnets-2012-001/lecture -- Lecture 11 - 15 to aid in understanding of Hinton 2006 paper above&lt;br /&gt;
&lt;br /&gt;
==Entrainment==&lt;br /&gt;
&lt;br /&gt;
http://www.scirp.org/Journal/PaperDownload.aspx?paperID=33251 -- &amp;quot;Alpha Rhythms Response to 10 Hz Flicker Is Wavelength Dependent&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.brainmachine.co.uk/wp-content/uploads/Herrmann_Flicker.pdf -- &amp;quot;EEG responses to 1–100 Hz flicker: resonance phenomena in visual cortex and their potential correlation to cognitive phenomena&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.jneurosci.org/content/23/37/11621.full.pdf -- &amp;quot;Human Cerebral Activation during Steady-State Visual-Evoked Responses&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.dauwels.com/Papers/CogDyn%202009.pdf -- &amp;quot;On the synchrony of steady state visual evoked potentials and oscillatory burst events&amp;quot;&lt;br /&gt;
&lt;br /&gt;
https://www.tu-ilmenau.de/fileadmin/public/lorentz-force/publications/peer/2012/haueisen2012/Halbleib_JCN_2012_Topographic_analysis_photic_driving.pdf -- &amp;quot;Topographic Analysis of Engagement and Disengagement of Neural Oscillators in Photic Driving: A Combined Electroencephalogram/Magnetoencephalogram Study&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==(not necessarilly very) Current Discussion==&lt;br /&gt;
&lt;br /&gt;
re Tononi&#039;s &amp;quot;Integrated Information Theory&amp;quot; http://www.scottaaronson.com/blog/?p=1799&lt;br /&gt;
&lt;br /&gt;
(19 February 2014) starting to think about possibility for experiments (loosely) related to [https://en.wikipedia.org/wiki/Visual_evoked_potential Visual Evoked Potential] research again - for instance:&lt;br /&gt;
&lt;br /&gt;
http://www.biosemi.com/publications/pdf/Bierman.pdf -- Wave function collapse&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:CoherentEEGAmbiguousFigureBinding.pdf]] -- &amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; -- Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&lt;br /&gt;
Note these two papers flog coherence measures - not trying to focus so much on that analysis right now, more interested in general understanding of what these experiments are about with possible goal of designing simpler experiments &amp;amp; analysis of similar perceptual/cognitive phenomena.&lt;br /&gt;
&lt;br /&gt;
Here is an article that looks more directly at visual evoked potential measures:&lt;br /&gt;
&lt;br /&gt;
[[File:ERP_Stereoscopic.pdf]] -- &amp;quot;Evoked Responses to Distinct and Nebulous Stereoscopic Stimuli&amp;quot; -- Dunlop et al 1983&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(11 September 2013) more on analysis methods:&lt;br /&gt;
&lt;br /&gt;
http://slesinsky.org/brian/misc/eulers_identity.html&lt;br /&gt;
&lt;br /&gt;
http://www.dspguide.com/ch8/1.htm&lt;br /&gt;
&lt;br /&gt;
[[File:Fftw3.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ParametricEEGAnalysis.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICATutorial.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICAFrequencyDomainEEG.pdf]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(21 August 2013) - readings relating statistical (etc math / signal processing / pattern recognition / machine learning) methods for EEG data interpretation.  A lot of stuff, a bit of nonsense ... and ... statistics!&lt;br /&gt;
&lt;br /&gt;
Would be good to identify any papers suitable for more in-depth study.  Currently have a wide field to graze for selections:&lt;br /&gt;
&lt;br /&gt;
[[File:DWTandFFTforEEG.pdf]] &amp;quot;EEG Classifier using Fourier Transform and Wavelet Transform&amp;quot; -- Maan Shaker, 2007&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:KulaichevCoherence.pdf]] -- &amp;quot;The Informativeness of Coherence Analysis in EEG Studies&amp;quot; -- A. P. Kulaichev 2009 &#039;&#039;note: interesting critical perspective re limitations, discussion of alternative analytics&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
[[File:ContinuousAndDiscreteWaveletTransforms.pdf]] -- review of (pre-1990) wavelet literature -- Christopher Heil and David Walnut, 1989&lt;br /&gt;
&lt;br /&gt;
[[File:EEGGammaMeditation.pdf]] -- &amp;quot;Brain sources of EEG gamma frequency during volitionally meditation-induced, altered states of consciousness, and experience of the self&amp;quot; -- Dietrich Lehman et al 2001&lt;br /&gt;
&lt;br /&gt;
http://neuro.hut.fi/~pavan/home/Hyvarinen2010_FourierICA_Neuroimage.pdf - &amp;quot;Independent component analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis&amp;quot; -- Aapo Hyvarinen, Pavan Ramkumar, Lauri Parkkonen, Riitta Hari - paper published in Neuroimage vol 49 (2010)&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.nickgillian.com/software/grt OpenSource Machine Learning Algs from NG @MIT]&lt;br /&gt;
&amp;lt;br&amp;gt;[https://www.usenix.org/system/files/conference/usenixsecurity12/sec12-final56.pdf Consumer grade EEG used to see &amp;quot;P300&amp;quot; reponse] and for thoes with a short attention span [http://www.extremetech.com/extreme/134682-hackers-backdoor-the-human-brain-successfully-extract-sensitive-data tldr]&lt;br /&gt;
&amp;lt;br&amp;gt;(discussed at meetup Wednesday 31 July 2013)&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&amp;lt;br&amp;gt;[[File:CoherentEEGAmbiguousFigureBinding.pdf]]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;We tested the hypothesis that perception of an alternative image in ambiguous figures would be manifest as high-frequency (gamma) components that become synchronized over multiple scalp sites as a &amp;quot;cognitive binding&amp;quot; process occurs.&amp;quot;&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://dreamsessions.net art, dream, and eeg]&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.believermag.com/issues/200710/?read=article_aviv mind v brain, hobson v solms]&lt;br /&gt;
&amp;lt;br&amp;gt;http://en.wikipedia.org/wiki/Activation-synthesis_hypothesis&lt;br /&gt;
&amp;lt;br&amp;gt;[[File:HobsomREMDreamProtoconsciousness.pdf|Hobson09ProtosconsciousnessREMDream]]&lt;br /&gt;
&lt;br /&gt;
&amp;quot;Hobson and McCarley originally proposed in the 1970s that the differences in the waking-NREM-REM sleep cycle was the result of interactions between aminergic REM-off cells and cholinergic REM-on cells.[4] This was perceived as the activation-synthesis model, stating that brain activation during REM sleep results in synthesis of dream creation.[1][1] Hobson&#039;s five cardinal characteristics include: intense emotions, illogical content, apparent sensory impressions, uncritical acceptance of dream events, and difficulty in being remembered.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
Berkeley Labs&lt;br /&gt;
&lt;br /&gt;
[http://gallantlab.org/index.html Gallant Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://walkerlab.berkeley.edu/ Walker Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://socrates.berkeley.edu/~plab/ Palmer Group]&lt;br /&gt;
&lt;br /&gt;
==Sleep Research==&lt;br /&gt;
&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335403/ Comment on the AASM Manual for the Scoring of Sleep and Associated Events]&lt;br /&gt;
&lt;br /&gt;
==random tangents==&lt;br /&gt;
(following previous discussion) - we might select a few to study in more depth&lt;br /&gt;
(... or not!  Plenty more to explore - suggestions (random or otherwise) are welcome.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;stereoscopic perception:&#039;&#039;&#039;&lt;br /&gt;
*[[File:ERP_Stereoscopic.pdf]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
some (maybe) interesting background on Information Theory (cool title...)&lt;br /&gt;
 Claude Shannon: &amp;quot;Communication in the Presence of Noise&amp;quot;&lt;br /&gt;
 [[File:Shannon_noise.pdf]]&lt;br /&gt;
 &amp;quot;We will call a system that transmits without errors at the rate &#039;&#039;C&#039;&#039; an ideal system.&lt;br /&gt;
  Such a system cannot be achieved with any finite encoding process&lt;br /&gt;
  but can be approximated as closely as desired.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
wikipedia etc quick reads:&lt;br /&gt;
 https://en.wikipedia.org/wiki/Eeg&lt;br /&gt;
 https://en.wikipedia.org/wiki/Neural_synchronization&lt;br /&gt;
 https://en.wikipedia.org/wiki/Event-related_potentials&lt;br /&gt;
 http://www.scholarpedia.org/article/Spike-and-wave_oscillations&lt;br /&gt;
 http://www.scholarpedia.org/article/Thalamocortical_oscillations&lt;br /&gt;
&lt;br /&gt;
==Previously==&lt;br /&gt;
&lt;br /&gt;
[http://www.psychiclab.net/ Masahiro&#039;s EEG Device/IBVA Software]&lt;br /&gt;
&lt;br /&gt;
[http://www.instructables.com/id/open-brain-wave-interface-hardware-1/ and ... open source hardware design and kits on instructables.com]&lt;br /&gt;
&lt;br /&gt;
[http://brainstorms.puzzlebox.info/ Puzzlebox - Opensource BCI Developers]&lt;br /&gt;
&lt;br /&gt;
Morgan from GazzLab @ MissionBay/UCSF&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
https://github.com/gazzlab&lt;br /&gt;
&lt;br /&gt;
Let&#039;s ease into a lightweight &amp;quot;journal club&amp;quot; discussion with this technical report from NeuroSky.&lt;br /&gt;
&lt;br /&gt;
Name: A user-friendly SSVEP-based brain-computer interface using a time-domain classifier, Luo A and Sullivan TJ 2010&lt;br /&gt;
&lt;br /&gt;
URL: [[File:NeuroSkyVEP.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
Please add your comments &amp;amp; questions here.&lt;br /&gt;
&lt;br /&gt;
==Background Reading==&lt;br /&gt;
&lt;br /&gt;
http://nanosouffle.net/ (view into Arxiv.org)&lt;br /&gt;
&lt;br /&gt;
Name: Hunting for Meaning after Midnight, Miller 2007&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0002.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Name: Broken mirrors, Ram, VS, &amp;amp; Oberman, LM, 2006, Nov&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0003.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Ramachandran Critique&lt;br /&gt;
&lt;br /&gt;
http://blogs.scientificamerican.com/guest-blog/2012/11/06/whats-so-special-about-mirror-neurons/&lt;br /&gt;
&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773693/&lt;br /&gt;
&lt;br /&gt;
Sleep/Dream Studies&lt;br /&gt;
&lt;br /&gt;
http://www.cns.atr.jp/dni/en/publications/&lt;br /&gt;
&lt;br /&gt;
==NeuroSky Docs==&lt;br /&gt;
[[File:NeuroSkyDongleProtocol.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
[[File:NeuroSkyCommunicationsProtocol.pdf‎]]&lt;/div&gt;</summary>
		<author><name>104.11.210.161</name></author>
	</entry>
	<entry>
		<id>https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=48995</id>
		<title>DreamTeam/Reading</title>
		<link rel="alternate" type="text/html" href="https://wiki.extremist.software/index.php?title=DreamTeam/Reading&amp;diff=48995"/>
		<updated>2015-08-24T15:39:59Z</updated>

		<summary type="html">&lt;p&gt;104.11.210.161: /* Backpropagation */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;(note wiki contains some useful clues re previous neuro research at Noisebridge ... For example, the [[Analog_EEG_Amp]] page describes some project ideas and work done by others here in 2012) &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Backpropagation ==&lt;br /&gt;
&lt;br /&gt;
http://www4.rgu.ac.uk/files/chapter3%20-%20bp.pdf (works through simple example)&lt;br /&gt;
&lt;br /&gt;
http://mattmazur.com/2015/03/17/a-step-by-step-backpropagation-example/&lt;br /&gt;
&lt;br /&gt;
http://page.mi.fu-berlin.de/rojas/neural/chapter/K7.pdf&lt;br /&gt;
&lt;br /&gt;
also see http://page.mi.fu-berlin.de/rojas/neural/neuron.pdf (entire book &amp;quot;Neural Networks - a Systemic Introduction&amp;quot; by Raul Rojas)&lt;br /&gt;
&lt;br /&gt;
http://work.caltech.edu/lectures.html&lt;br /&gt;
&lt;br /&gt;
https://github.com/nbdt/neuralNets (our ANN code)&lt;br /&gt;
&lt;br /&gt;
== Spiking Neural Networks ==&lt;br /&gt;
&lt;br /&gt;
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.3902 -- &amp;quot;Pattern Recognition in a Bucket&amp;quot;&lt;br /&gt;
&lt;br /&gt;
http://www.igi.tugraz.at/maass/psfiles/221.pdf -- &amp;quot;Noise as a Resource for Computation and Learning in Spiking Neural Networks&amp;quot;&lt;br /&gt;
&lt;br /&gt;
==(not necessarilly very) Current Discussion==&lt;br /&gt;
&lt;br /&gt;
re Tononi&#039;s &amp;quot;Integrated Information Theory&amp;quot; http://www.scottaaronson.com/blog/?p=1799&lt;br /&gt;
&lt;br /&gt;
(19 February 2014) starting to think about possibility for experiments (loosely) related to [https://en.wikipedia.org/wiki/Visual_evoked_potential Visual Evoked Potential] research again - for instance:&lt;br /&gt;
&lt;br /&gt;
http://www.biosemi.com/publications/pdf/Bierman.pdf -- Wave function collapse&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:CoherentEEGAmbiguousFigureBinding.pdf]] -- &amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; -- Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&lt;br /&gt;
Note these two papers flog coherence measures - not trying to focus so much on that analysis right now, more interested in general understanding of what these experiments are about with possible goal of designing simpler experiments &amp;amp; analysis of similar perceptual/cognitive phenomena.&lt;br /&gt;
&lt;br /&gt;
Here is an article that looks more directly at visual evoked potential measures:&lt;br /&gt;
&lt;br /&gt;
[[File:ERP_Stereoscopic.pdf]] -- &amp;quot;Evoked Responses to Distinct and Nebulous Stereoscopic Stimuli&amp;quot; -- Dunlop et al 1983&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(11 September 2013) more on analysis methods:&lt;br /&gt;
&lt;br /&gt;
http://slesinsky.org/brian/misc/eulers_identity.html&lt;br /&gt;
&lt;br /&gt;
http://www.dspguide.com/ch8/1.htm&lt;br /&gt;
&lt;br /&gt;
[[File:Fftw3.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ParametricEEGAnalysis.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICATutorial.pdf]]&lt;br /&gt;
&lt;br /&gt;
[[File:ICAFrequencyDomainEEG.pdf]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
(21 August 2013) - readings relating statistical (etc math / signal processing / pattern recognition / machine learning) methods for EEG data interpretation.  A lot of stuff, a bit of nonsense ... and ... statistics!&lt;br /&gt;
&lt;br /&gt;
Would be good to identify any papers suitable for more in-depth study.  Currently have a wide field to graze for selections:&lt;br /&gt;
&lt;br /&gt;
[[File:DWTandFFTforEEG.pdf]] &amp;quot;EEG Classifier using Fourier Transform and Wavelet Transform&amp;quot; -- Maan Shaker, 2007&lt;br /&gt;
&lt;br /&gt;
[[File:Schak99InstantaneousCoherenceStroopTask.pdf]] -- &amp;quot;Instantaneous EEG Coherence Analysis During the Stroop Task&amp;quot; -- Schack et al 1999&lt;br /&gt;
&lt;br /&gt;
[[File:KulaichevCoherence.pdf]] -- &amp;quot;The Informativeness of Coherence Analysis in EEG Studies&amp;quot; -- A. P. Kulaichev 2009 &#039;&#039;note: interesting critical perspective re limitations, discussion of alternative analytics&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
[[File:ContinuousAndDiscreteWaveletTransforms.pdf]] -- review of (pre-1990) wavelet literature -- Christopher Heil and David Walnut, 1989&lt;br /&gt;
&lt;br /&gt;
[[File:EEGGammaMeditation.pdf]] -- &amp;quot;Brain sources of EEG gamma frequency during volitionally meditation-induced, altered states of consciousness, and experience of the self&amp;quot; -- Dietrich Lehman et al 2001&lt;br /&gt;
&lt;br /&gt;
http://neuro.hut.fi/~pavan/home/Hyvarinen2010_FourierICA_Neuroimage.pdf - &amp;quot;Independent component analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis&amp;quot; -- Aapo Hyvarinen, Pavan Ramkumar, Lauri Parkkonen, Riitta Hari - paper published in Neuroimage vol 49 (2010)&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.nickgillian.com/software/grt OpenSource Machine Learning Algs from NG @MIT]&lt;br /&gt;
&amp;lt;br&amp;gt;[https://www.usenix.org/system/files/conference/usenixsecurity12/sec12-final56.pdf Consumer grade EEG used to see &amp;quot;P300&amp;quot; reponse] and for thoes with a short attention span [http://www.extremetech.com/extreme/134682-hackers-backdoor-the-human-brain-successfully-extract-sensitive-data tldr]&lt;br /&gt;
&amp;lt;br&amp;gt;(discussed at meetup Wednesday 31 July 2013)&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;Coherent EEG Indicators of Cognitive Binding During Ambiguous Figure Tasks&amp;quot; Klemm, Li, and Hernandez 2000 &lt;br /&gt;
&amp;lt;br&amp;gt;[[File:CoherentEEGAmbiguousFigureBinding.pdf]]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;quot;We tested the hypothesis that perception of an alternative image in ambiguous figures would be manifest as high-frequency (gamma) components that become synchronized over multiple scalp sites as a &amp;quot;cognitive binding&amp;quot; process occurs.&amp;quot;&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://dreamsessions.net art, dream, and eeg]&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
[http://www.believermag.com/issues/200710/?read=article_aviv mind v brain, hobson v solms]&lt;br /&gt;
&amp;lt;br&amp;gt;http://en.wikipedia.org/wiki/Activation-synthesis_hypothesis&lt;br /&gt;
&amp;lt;br&amp;gt;[[File:HobsomREMDreamProtoconsciousness.pdf|Hobson09ProtosconsciousnessREMDream]]&lt;br /&gt;
&lt;br /&gt;
&amp;quot;Hobson and McCarley originally proposed in the 1970s that the differences in the waking-NREM-REM sleep cycle was the result of interactions between aminergic REM-off cells and cholinergic REM-on cells.[4] This was perceived as the activation-synthesis model, stating that brain activation during REM sleep results in synthesis of dream creation.[1][1] Hobson&#039;s five cardinal characteristics include: intense emotions, illogical content, apparent sensory impressions, uncritical acceptance of dream events, and difficulty in being remembered.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
Berkeley Labs&lt;br /&gt;
&lt;br /&gt;
[http://gallantlab.org/index.html Gallant Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://walkerlab.berkeley.edu/ Walker Group]&lt;br /&gt;
&amp;lt;br&amp;gt;[http://socrates.berkeley.edu/~plab/ Palmer Group]&lt;br /&gt;
&lt;br /&gt;
==Sleep Research==&lt;br /&gt;
&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335403/ Comment on the AASM Manual for the Scoring of Sleep and Associated Events]&lt;br /&gt;
&lt;br /&gt;
==random tangents==&lt;br /&gt;
(following previous discussion) - we might select a few to study in more depth&lt;br /&gt;
(... or not!  Plenty more to explore - suggestions (random or otherwise) are welcome.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;stereoscopic perception:&#039;&#039;&#039;&lt;br /&gt;
*[[File:ERP_Stereoscopic.pdf]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
some (maybe) interesting background on Information Theory (cool title...)&lt;br /&gt;
 Claude Shannon: &amp;quot;Communication in the Presence of Noise&amp;quot;&lt;br /&gt;
 [[File:Shannon_noise.pdf]]&lt;br /&gt;
 &amp;quot;We will call a system that transmits without errors at the rate &#039;&#039;C&#039;&#039; an ideal system.&lt;br /&gt;
  Such a system cannot be achieved with any finite encoding process&lt;br /&gt;
  but can be approximated as closely as desired.&amp;quot;&lt;br /&gt;
&lt;br /&gt;
wikipedia etc quick reads:&lt;br /&gt;
 https://en.wikipedia.org/wiki/Eeg&lt;br /&gt;
 https://en.wikipedia.org/wiki/Neural_synchronization&lt;br /&gt;
 https://en.wikipedia.org/wiki/Event-related_potentials&lt;br /&gt;
 http://www.scholarpedia.org/article/Spike-and-wave_oscillations&lt;br /&gt;
 http://www.scholarpedia.org/article/Thalamocortical_oscillations&lt;br /&gt;
&lt;br /&gt;
==Previously==&lt;br /&gt;
&lt;br /&gt;
[http://www.psychiclab.net/ Masahiro&#039;s EEG Device/IBVA Software]&lt;br /&gt;
&lt;br /&gt;
[http://www.instructables.com/id/open-brain-wave-interface-hardware-1/ and ... open source hardware design and kits on instructables.com]&lt;br /&gt;
&lt;br /&gt;
[http://brainstorms.puzzlebox.info/ Puzzlebox - Opensource BCI Developers]&lt;br /&gt;
&lt;br /&gt;
Morgan from GazzLab @ MissionBay/UCSF&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
https://github.com/gazzlab&lt;br /&gt;
&lt;br /&gt;
Let&#039;s ease into a lightweight &amp;quot;journal club&amp;quot; discussion with this technical report from NeuroSky.&lt;br /&gt;
&lt;br /&gt;
Name: A user-friendly SSVEP-based brain-computer interface using a time-domain classifier, Luo A and Sullivan TJ 2010&lt;br /&gt;
&lt;br /&gt;
URL: [[File:NeuroSkyVEP.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
Please add your comments &amp;amp; questions here.&lt;br /&gt;
&lt;br /&gt;
==Background Reading==&lt;br /&gt;
&lt;br /&gt;
http://nanosouffle.net/ (view into Arxiv.org)&lt;br /&gt;
&lt;br /&gt;
Name: Hunting for Meaning after Midnight, Miller 2007&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0002.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Name: Broken mirrors, Ram, VS, &amp;amp; Oberman, LM, 2006, Nov&lt;br /&gt;
&lt;br /&gt;
URL: &amp;lt;http://www.noisebridge.net/pipermail/neuro/attachments/20130501/4b992eb6/attachment-0003.pdf&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Ramachandran Critique&lt;br /&gt;
&lt;br /&gt;
http://blogs.scientificamerican.com/guest-blog/2012/11/06/whats-so-special-about-mirror-neurons/&lt;br /&gt;
&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773693/&lt;br /&gt;
&lt;br /&gt;
Sleep/Dream Studies&lt;br /&gt;
&lt;br /&gt;
http://www.cns.atr.jp/dni/en/publications/&lt;br /&gt;
&lt;br /&gt;
==NeuroSky Docs==&lt;br /&gt;
[[File:NeuroSkyDongleProtocol.pdf‎]]&lt;br /&gt;
&lt;br /&gt;
[[File:NeuroSkyCommunicationsProtocol.pdf‎]]&lt;/div&gt;</summary>
		<author><name>104.11.210.161</name></author>
	</entry>
	<entry>
		<id>https://wiki.extremist.software/index.php?title=Intro_to_Python&amp;diff=43718</id>
		<title>Intro to Python</title>
		<link rel="alternate" type="text/html" href="https://wiki.extremist.software/index.php?title=Intro_to_Python&amp;diff=43718"/>
		<updated>2014-08-06T06:10:41Z</updated>

		<summary type="html">&lt;p&gt;104.11.210.161: adding ideas&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;I am teaching a one-time class on python programming! Ideas include:&lt;br /&gt;
&lt;br /&gt;
* Cool things that you can do in Python&lt;br /&gt;
* Opensource projects written in Python&lt;br /&gt;
* Coding Python is easy&lt;br /&gt;
* Reads like a poem&lt;br /&gt;
* &lt;br /&gt;
&lt;br /&gt;
== When is the class? ==&lt;br /&gt;
I will be teaching the class on &#039;&#039;&#039;Sunday, August 10 at 1:00 PM.&#039;&#039;&#039; I expect the class will last for up to two hours.&lt;br /&gt;
&lt;br /&gt;
== Where is the class being taught? ==&lt;br /&gt;
&#039;&#039;&#039;The class will be taught in the [[Classrooms#Church|Church classroom]] at [[Noisebridge]].&#039;&#039;&#039; The address is:&lt;br /&gt;
&lt;br /&gt;
[[Getting_Here|2169 Mission St.&amp;lt;br&amp;gt;&lt;br /&gt;
3rd Floor&amp;lt;br&amp;gt;&lt;br /&gt;
San Francisco, CA 94110]]&lt;br /&gt;
&lt;br /&gt;
The gate to the space should be open while the class is in session. If not, [[Getting In|you can read up on getting into the space by clicking here]].&lt;br /&gt;
&lt;br /&gt;
== Should I bring a computer? ==&lt;br /&gt;
Computers are not necessary.&lt;br /&gt;
&lt;br /&gt;
== What do I need to know? ==&lt;br /&gt;
This class is taught in English. No prior knowledge of programming is necessary.&lt;br /&gt;
&lt;br /&gt;
== How much does this class cost? ==&lt;br /&gt;
This class is free, as are all classes taught at Noisebridge. You do not need to register or RSVP - just show up!&lt;br /&gt;
&lt;br /&gt;
If, however, you feel the class was beneficial, we&#039;d really appreciate a [Donate or Pay Dues|donation to Noisebridge] to fund our ongoing renovation and lasting presence in the city.&lt;br /&gt;
&lt;br /&gt;
== Why are you teaching this class? ==&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== How can I keep informed about the class? ==&lt;br /&gt;
If anything changes, you can check this page for any updates. I will also send emails to the [https://www.noisebridge.net/mailman/listinfo/noisebridge-announce Noisebridge-announce mailing list], so you might consider subscribing to it.&lt;br /&gt;
&lt;br /&gt;
== I have a friend/relative with no access to computers and/or the Internet. ==&lt;br /&gt;
Please print this page out and give it to them!&lt;br /&gt;
&lt;br /&gt;
== How can I get more information? ==&lt;br /&gt;
[[User:Bfb|Please contact me. My information is available by clicking here.]]&lt;/div&gt;</summary>
		<author><name>104.11.210.161</name></author>
	</entry>
</feed>